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View Structure Prediction Details

Protein: gi|15240298
Organism: Arabidopsis thaliana
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240298.

Description E-value Query
Range
Subject
Range
gi|116095803, gi... - gi|116630221|ref|YP_815393.1| hypothetical protein LGAS_1663 [Lactobacillus gasseri ATCC 33323], gi|...
138.0 [0..58] [219..2198]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFFGTKDKA PIYAGIAVVS FMILTGLTFA GTAVALTVMI PVLVVLSPIL VPAVITSSFL  60
   61 ATGFLASGSL GALGIALLIW LYKKEEYSRA TLHARGGRPD GPNKLAESGK 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.619789
Match: PF01277.8
Description: No description for PF01277.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSGGDNPLKE DKPPERDKLP RKDKPSKEDN LLKGDKPVEE DKLPAEEEKP PQKDKPAEGH  60
   61 KPPQKDKPA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [180-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGDKPVEEDK PPQKDKPAEG DKHVEEDMPL GGVEHLSIPE IPKVLY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle