YRC Public Data Repository - Protein Structure Prediction

Protein:	ISPG_ARATH
Organism:	Arabidopsis thaliana
Length:	741 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISPG_ARATH.

Description	E-value	Query Range	Subject Range
gi\|20453201 - gi\|20453201\|gb\|AAM19840.1\| AT5g60600/mup24_10 [Arabidopsis thaliana]	856.0	[0..1]	[741..1]
gi\|27903511 - gi\|27903511\|gb\|AAO24774.1\| GCPE protein [Catharanthus roseus]	847.0	[0..1]	[740..1]
gi\|112258871 - gi\|112258871\|gb\|ABG75916.2\| (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Stevia rebaudiana...	846.0	[0..1]	[740..1]
gi\|27462474 - gi\|27462474\|gb\|AAO15447.1\|AF435086_1 GcpE [Lycopersicon esculentum]	844.0	[0..1]	[740..1]
gi\|218191125 - gi\|218191125\|gb\|EEC73552.1\| hypothetical protein OsI_07973 [Oryza sativa Indica Group] ISPG_ORYSJ - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic OS=Oryza sativa sub...	816.0	[0..1]	[740..1]
gi\|50082773, gi\|... - gi\|50082773\|gb\|AAT70082.1\| hydroxymethylbutenyl 4-diphosphate synthase [Zea mays], gi\|50082771\|gb\|AA...	812.0	[0..1]	[740..1]
gi\|61742128 - gi\|61742128\|gb\|AAX54905.1\| putative chloroplast 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synth...	664.0	[0..75]	[741..9]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ  60
   61 PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE HPIRIQTMTT SDTKDITGTV 120
  121 DEVMRIADKG ADIVRITVQG KKEADACF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIKDKLVQLN YNIPLVADIH FAPTVALRVA ECFDKIRVNP GNFADRRAQF ETIDYTEDEY  60
   61 QKELQHIEQV FTPLVEKCKK YGRAMRIGTN HGSLSDRIMS YYGDSPRGMV ESAFEFARIC 120
  121 RKLDYHNFVF SMKASNPVIM VQAYRLLVAE MYVHGWDYPL HLGVTEAGEG EDGRMKSAIG 180
  181 IGTLLQDGLG DTIRVSLTEP PEEEIDPCRR LANLGTKAAK LQQGVAPFEE KH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [381-741]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHYFDFQRRT GDLPVQKEGE EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG  60
   61 MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL 120
  121 KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR 180
  181 LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL LVDGLGDGVM LEAPDQDFDF 240
  241 LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV 300
  301 NGPGEMADAD FGYVGGSPGK IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD 360
  361 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1aopA
Description:	SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits