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View Structure Prediction Details

Protein: gi|30697388, gi|...
Organism: Arabidopsis thaliana
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30697388, gi|....

Description E-value Query
Range
Subject
Range
gi|9757760, gi|3... - gi|9757760|dbj|BAB08241.1| unnamed protein product [Arabidopsis thaliana], gi|30697386|ref|NP_851231...
357.0 [0..1] [494..1]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP  60
   61 EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR GKSSLKNLLP KAGCKPKTSN 120
  121 TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS 180
  181 VAPQTPNRKG SVHIARSRSV 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.951
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [201-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC  60
   61 LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT CEVCKQEVKN LPVTLLRIQS 120
  121 LRNSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.045757
Match: 2d8sA
Description: No description for 2d8sA was found.

Predicted Domain #3
Region A:
Residues: [326-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPQLDVSGYR VWQEVPVLVI ISMLAYFCFL EQLLVENMGT GAIAISLPFS CILGLLASMT  60
   61 ASTMVLEYSY AVMRRFVWIY ASVQFALVVL FAHIFYSVVK LQPVLSVLLS TFAGFGVCIC 120
  121 GSSVMVEFVR WRRRWRARRL EQQLNHALTL SQPPQPLDPT TSLHHSNTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle