YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42573317
Organism:	Arabidopsis thaliana
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42573317.

Description	E-value	Query Range	Subject Range
gi\|42570512 - gi\|42570512\|ref\|NP_850798.2\| transcriptional coactivator p15 (PC4) family protein [Arabidopsis thali...	128.0	[0..1]	[87..1]
gi\|73954359 - gi\|73954359\|ref\|XP_536425.2\| PREDICTED: similar to Activated RNA polymerase II transcriptional coact...	99.0	[0..3]	[85..213]
gi\|145018284, gi... - gi\|39974147\|ref\|XP_368464.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA49122.1\| hypothetic...	93.0	[0..1]	[87..5]
gi\|16610191 - gi\|16610191\|emb\|CAD10638.1\| PBF68 protein [Nicotiana tabacum]	91.0	[0..2]	[87..81]
TCP4_NEUCR - Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa GN=80A10.210 PE=3 SV=1 TCP4_NEUCR - Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-...	88.0	[0..10]	[87..4]
gi\|114600763 - gi\|114600763\|ref\|XP_001154452.1\| PREDICTED: similar to SUB1 homolog (S. cerevisiae) isoform 2 [Pan t...	88.0	[0..3]	[85..48]
gi\|42544337, gi\|... - gi\|46137341\|ref\|XP_390362.1\| hypothetical protein FG10186.1 [Gibberella zeae PH-1], gi\|42544337\|gb\|E...	87.0	[0..11]	[87..8]
gi\|109076878 - gi\|109076878\|ref\|XP_001089347.1\| PREDICTED: similar to Activated RNA polymerase II transcriptional c...	86.0	[0..6]	[85..64]

Back

Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENGKRKDE DVRASDDRDE SETHAPPKKV AKPADEIEDI FICNLDKNRR VFVRNCNGRI  60
   61 WIAIRQFFVK DGITLPCNSK QGPAILVCFL CIIMLTRFSM SPICCRYLSK PGTVERSSEP 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.61
Match:	1pcfA
Description:	Transcriptional coactivator PC4 C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits