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View Structure Prediction Details

Protein: RIN3_ARATH
Organism: Arabidopsis thaliana
Length: 577 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIN3_ARATH.

Description E-value Query
Range
Subject
Range
gi|17063161 - gi|17063161|gb|AAL32977.1| AT5g51450/MFG13_16 [Arabidopsis thaliana]
379.0 [0..1] [577..1]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITYLHISV ATTALSFVGL QVWTELSLDR LRADGIITKN ISLGNSENTL ELLLSSHTTI  60
   61 ALLASFVLNI YILLVLSLKT LFFGDLYAIE TRKLVERLAN YIIYKGTFLP FVVPRTVFQG 120
  121 VLWTIWLTVL CTLKMFQALA RDRLDRLNAS P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTPWTYFRV YSALFMVLST DLCWIKLSLM IYNTVGSSVY LLLLFEPCGI AFETLQALLI  60
   61 HGFQLLDMWI NHLAVKNSDC QRSKFYDSMT AGSLLEWKGL LNRNLGFFLD MATLVMALGH 120
  121 YLHIWWLHGM AFHLVDAVLF LNIRALLSSI LKRIKGYIKL RVALGALHAA LLDATSEELR 180
  181 DYDDECAICR EPMAKAKRLH CNHLFHLGCL RSWLDQGLNE VYSCPTCRKP LFVGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 1fbvA
Description: Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.434026084000615 bayes_pls_golite062009
protein binding 0.31534665043077 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [387-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESEANPSRG EVSSDEHLAR QFERQNNSVH ALTTGMFPTE TPNFTESDPW RNSEVDPSWL  60
   61 QTWSDQGVDV VGSSAGSRSV GLGQVQLMMR HLASVGEGSA QTTLDDASWG LWPMNPSQAS 120
  121 TSSTYVPPGA GGRTGGLHLR TVSRAANNMA SILAMAETVR EVLPHVPDEI IFQDLQRTNS 180
  181 VSVTVNNLLQ M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle