YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22326560
Organism:	Arabidopsis thaliana
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22326560.

Description	E-value	Query Range	Subject Range
RLME_PSEPF - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas fluorescens (strain Pf0-1) GN=rlmE PE...	106.0	[0..1]	[60..8]
gi\|87162879 - gi\|87162879\|gb\|ABD28674.1\| Ribosomal RNA methyltransferase RrmJ/FtsJ [Medicago truncatula]	105.0	[0..1]	[60..1]
gi\|21593533 - gi\|21593533\|gb\|AAM65500.1\| cell division-like protein [Arabidopsis thaliana]	105.0	[0..1]	[60..1]
gi\|46200783 - gi\|46200783\|ref\|ZP_00207841.1\| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]	104.0	[0..3]	[61..41]
gi\|218198852 - gi\|218198852\|gb\|EEC81279.1\| hypothetical protein OsI_24387 [Oryza sativa Indica Group] gi\|115469828, gi... - gi\|53792764\|dbj\|BAD53799.1\| putative FtsJ homolog 1 isoform b [Oryza sativa Japonica Group], gi\|2226...	103.0	[0..1]	[60..1]
gi\|94491538, gi\|... - gi\|94491538\|ref\|ZP_01298749.1\| hypothetical protein CburD_01001329 [Coxiella burnetii Dugway 7E9-12]... RLME_COXBU, RRMJ... - Ribosomal RNA large subunit methyltransferase J OS=Coxiella burnetii GN=rrmJ PE=3 SV=1, Ribosomal RN... RLME_COXBN - Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rl... RLME_COXBU - Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain RSA 493 / Nine Mile pha... RLME_COXB2 - Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain CbuG_Q212) GN=rlmE PE=3...	103.0	[0..3]	[61..7]
TRM7_DICDI - Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyostelium discoideum GN=fsj... gi\|60469225, gi\|... - gi\|66814044\|ref\|XP_641201.1\| rRNA methyltransferase [Dictyostelium discoideum AX4], gi\|60469225\|gb\|E...	102.0	[0..1]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKASRDKRD IYYRKAKEEG WRARSAFKLL QIDEEFNIFE GVKRVVDLCA APGSWSQSGR  60
   61 S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.79
Match:	1l9kA
Description:	An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits