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View Structure Prediction Details

Protein: gi|18422298, gi|...
Organism: Arabidopsis thaliana
Length: 254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18422298, gi|....

Description E-value Query
Range
Subject
Range
gi|21553640 - gi|21553640|gb|AAM62733.1| contains similarity to 22 kDa peroxisomal membrane protein [Arabidopsis t...
295.0 [0..1] [254..1]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIVGLSKRF FSDRRSLHGI NNALLKTVFT GRKPILGFSG RSIHELRKTG NFVIPRVFSV  60
   61 SRNLTTKASS SSSKQPAFLR WYLRKLESHP FMTKSITTSV IYMAADLTSQ MITMEPTGSF 120
  121 DLIRTARMAS FGLIFLGPSQ HLWFSYLSKI LPKRDVLTTF KKIMMGQVLF GPVSNTVFYS 180
  181 YNAALQGE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [189-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSEEIVARLK RDLLPTLKNG LMYWPVCDFV TFKYVPVHLQ PLMNSSCAYI WTIYLTYMAN  60
   61 QTKADS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 8.60206
Match: PF04117.3
Description: No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle