YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15241671
Organism: Arabidopsis thaliana
Length: 119 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241671.

Description E-value Query
Range
Subject
Range
gi|195434140, gi... - gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni], gi|194161146|gb|EDW76047.1| GK1487...
gi|195146744, gi... - gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis], gi|194106297|gb|EDW28340.1| GL1914...
gi|194859971, gi... - gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta], gi|190661356|gb|EDV58548.1| GG10133 [D...
gi|190616825, gi... - gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae], gi|190616825|gb|EDV32349.1| GF15790...
gi|220953484 - gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|195578215, gi... - gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans], gi|194190970|gb|EDX04546.1| GD23702 ...
FBpp0305673, TfI... - The gene Transcription factor IIB is referred to in FlyBase by the symbol Dmel\TfIIB (CG5193, FBgn00...
138.0 [0..5] [118..12]

Back

Predicted Domain #1
Region A:
Residues: [1-54]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVITCLDCK KRTDTVIDYR SGDTICTECG LILDSHYIVD SFDRNISYMT PSIR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.8
Match: 1rlyA
Description: RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [55-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKHKVGTNVL IKNPNPKDKA SSISFRVSSP SCCSHYALLE VEVHHTRLIE ELVLVRFDCL  60
   61 AVYLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle