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View Structure Prediction Details

Protein: XGD1_ARATH
Organism: Arabidopsis thaliana
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XGD1_ARATH.

Description E-value Query
Range
Subject
Range
gi|30683790, gi|... - gi|30683790|ref|NP_567512.2| exostosin family protein [Arabidopsis thaliana], gi|26983908|gb|AAN8620...
493.0 [0..7] [495..24]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPRSRRCS LSLLTLFSIT LILISVSLFV STKPANKPFL DYRNQFSISI SISSPLEQNT  60
   61 TNTSFVSASP PLSPLGQSNT TNTILASSSS SSSFSDHQNQ NKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPTSKKIVI RKRSGLDKIE SDLAKARAAI KKAASTQNYV SSLYKNPAAF HQSHTEMMNR  60
   61 FKVWTYTEGE VPLFHDGPVN DIYGIEGQFM DEMCVDGPKS RSRFRADRPE NAHVFFIPFS 120
  121 VAKVIHFVYK PITSVEGFSR ARLHRLIEDY VDVVATKHPY WNRSQGGDHF MVSCHDWAPD 180
  181 VID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNPKLFEKFI RGLCNANTSE GFRPNVDVSI PEIYLPKGKL GPSFLGKSPR VRSILAFFAG  60
   61 RSHGEIRKIL FQHWKEMDNE VQVYDRLPPG KDYTKTMGMS KFCLCPSGWE VASPREVEAI 120
  121 YAGCVPVIIS DNYSLPFSDV LNWDSFSIQI PVSRIKEIKT ILQSVSLVRY LKMYKRVLEV 180
  181 KQHFVLNRPA KPYDVMHMML HSIWLRRLNL RLGT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.05
Match: 2nzwA
Description: No description for 2nzwA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle