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View Structure Prediction Details

Protein: gi|124301112, gi...
Organism: Arabidopsis thaliana
Length: 119 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124301112, gi....

Description E-value Query
Range
Subject
Range
gi|40549275 - gi|40549275|gb|AAR87697.1| APETALA3-like protein AP3-1 [Lindera erythrocarpa]
139.0 [0..1] [118..4]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVHELSTL CGITSCAIIY SPYDTSHEVW PSNSGVQRVV SEFRTLPEMD QHKKMVDQEG  60
   61 FLKQRIAKPT ENLRRQRKDN KELEMTEVMF RCLIGNMEML KSESQSESTT MVYENDEPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 1n6jA
Description: Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.0368771990474 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle