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View Structure Prediction Details

Protein: PME52_ARATH
Organism: Arabidopsis thaliana
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME52_ARATH.

Description E-value Query
Range
Subject
Range
gi|92895238 - gi|92895238|gb|ABE92634.1| Pectinesterase [Medicago truncatula]
396.0 [0..8] [292..305]

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Predicted Domain #1
Region A:
Residues: [1-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCLFIFIAL LLSSCIGTLK ALDQTCGNKV VNTIVVDQAG SGEGQRVTTI TYNGHAATDV  60
   61 SSTFTSYPSH IVVRNLSIMN TYNRLTSLTK ANGMSWDIKP AVAISVYGDK SAFYNCDFLG 120
  121 LQDTVWDNLG RHHFKNCYIE GAIDFIFGSG QSVYEDCHIN ATAGALASKV SFGYITAQGR 180
  181 SSDSDPSGFV FLRGSVSGST SVYLGRAYGP FSRVIFIQTD LSSVVHPEGW YSWHYGGYEM 240
  241 SFTYAEVECK GAGSDMSRRV PWIDKLHSFY TKQQFSISNF IDQDQWISNI PRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1xg2A
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle