YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HDA2_ARATH
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|2827430 - gi|2827430|gb|AAB99850.1| histone deacetylase 1 [Gallus gallus]
345.0 [0..69] [386..4]

Back

Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI  60
   61 LNSKLYFDVP L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKVSIIYSSS YDISFMGIEK LHPFDSSKWG RVCKFLVSDG FLEEKAIVEP LEASKIDLLV  60
   61 VHSENYLNSL KSSATVARIT EVAPVAFFPN FLVQQKVLYP FRKQVGGTIL AAKLATERGW 120
  121 AINIGGGFHH CTAERGGGFC AFADISLCIH FAFLRLRISR VMIIDLDAHQ GNGHETDLGD 180
  181 DNRVYILDMY NPEIYPFDYR ARRFIDQKVE VMSGTTTDEY LRKLDEALEV ASRNFQPELV 240
  241 IYNAGTDILD GDPLGLLKIS PDGITSRDEK VFRFAREKNI PLVMLTSGGY MKSSARVIAD 300
  301 SIENLSRQGL IQTRPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.154902
Match: 2v5xA
Description: No description for 2v5xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle