YRC Public Data Repository - Protein Structure Prediction

Protein:	MRS2B_ARATH
Organism:	Arabidopsis thaliana
Length:	459 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRS2B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|12007447 - gi\|12007447\|gb\|AAG45213.1\|AF322255_1 magnesium transporter protein [Arabidopsis thaliana]	265.0	[0..1]	[459..1]
gi\|119193044, gi... - gi\|90305914\|gb\|EAS35545.1\| hypothetical protein CIMG_00899 [Coccidioides immitis RS], gi\|119193044\|r...	240.0	[0..30]	[454..410]
gi\|71000922, gi\|... - gi\|71000922\|ref\|XP_755142.1\| CorA family metal ion transporter [Aspergillus fumigatus Af293], gi\|668...	239.0	[0..30]	[454..400]
gi\|85113241 - gi\|85113241\|ref\|XP_964489.1\| hypothetical protein NCU03312 [Neurospora crassa OR74A] gi\|32420609, gi\|... - gi\|32420609\|ref\|XP_330748.1\| hypothetical protein [Neurospora crassa], gi\|28926273\|gb\|EAA35253.1\| hy...	235.0	[0..30]	[454..336]
gi\|49525065 - gi\|49525065\|emb\|CAG58678.1\| unnamed protein product [Candida glabrata] gi\|49525065, gi\|... - gi\|50286659\|ref\|XP_445759.1\| unnamed protein product [Candida glabrata], gi\|49525065\|emb\|CAG58678.1\|...	235.0	[0..18]	[456..338]
gi\|221564892, gi... - gi\|222055603\|ref\|YP_002537965.1\| magnesium and cobalt transport protein CorA [Geobacter sp. FRC-32],...	231.0	[0..124]	[459..55]
gi\|56750194, gi\|... - gi\|56750194\|ref\|YP_170895.1\| cation transporter [Synechococcus elongatus PCC 6301], gi\|56685153\|dbj\|...	228.0	[0..14]	[459..17]
gi\|83775205 - gi\|83775205\|dbj\|BAE65328.1\| unnamed protein product [Aspergillus oryzae] gi\|169783998 - gi\|169783998\|ref\|XP_001826461.1\| hypothetical protein [Aspergillus oryzae RIB40]	227.0	[0..30]	[454..411]
gi\|111068504 - gi\|111068504\|gb\|EAT89624.1\| hypothetical protein SNOG_02893 [Phaeosphaeria nodorum SN15]	226.0	[0..30]	[451..372]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTPIPSTF TSLFNFSDHS PYPSPSLHYL LPGSSPSFSL QLSALSRTPI YFEALKVLSR  60
   61 SKCFAKSPTT AEDFVGDYES LNVSDDDDGS DSNSSDGDNG GGRDDSKKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.450	a.5.6	Hypothetical protein MTH1615
View	Download	0.329	a.118.1	ARM repeat
View	Download	0.294	a.256.1	Description not found.
View	Download	0.271	a.118.14	FliG
View	Download	0.271	a.118.14	FliG
View	Download	0.210	a.152.1	Antioxidant defence protein AhpD
View	Download	0.210	a.152.1	Antioxidant defence protein AhpD

Predicted Domain #2

Region A:
Residues: [110-459]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSSSSSSD STSLGIREPV YEVVEVKATG AISTRKINRR QLLKSSGLRP RDIRSVDPSL  60
   61 FMTNSVPSLL VREHAILLNL GSLRAIAMRD RVLIFDYNRR GGRAFVDTLM PRLNPRSMNG 120
  121 GPSMPFELEA VESALISRIQ RLEQRLMDIE PRVQALLEVL PNRLTADILE ELRISKQRLV 180
  181 ELGSRAGALR QMLLDLLEDP HEIRRICIMG RNCTLRRGDD DLECTLPSDK LIAEEEEEEI 240
  241 EMLLENYLQR CESCHGQAER LLDSAKEMED SIAVNLSSRR LEVSRFELLL QVGTFCVAVG 300
  301 ALIAGIFGMN LRSYLEEQAS AFWLTTGGII IGAAVAFFLM YSYLSRRKIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	2iubA
Description:	No description for 2iubA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits