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View Structure Prediction Details

Protein: PIGM_ARATH
Organism: Arabidopsis thaliana
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGM_ARATH.

Description E-value Query
Range
Subject
Range
gi|115932072, gi... - gi|115932072|ref|XP_001188803.1| PREDICTED: similar to Pigm protein [Strongylocentrotus purpuratus],...
430.0 [0..25] [436..13]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRESENTDD EPSKWMKFRS LLVFSMLLRV FLIVYGEWQD AHMEVRYTDV DYIVFSDAAS  60
   61 LMASGESPYK RTTYRYSPLL ALLLTPNSFF HRSWGKFLFS ASDLLVGWFI HKILKQRKVP 120
  121 EKICTYSVMV WLFNPFTFTI GTRGNCEPIV CAMILWIILC LMQGNLLQAA FWYGLVVHFR 180
  181 VYPIIYALPI ILVLDTQVFR SGQKPALLYW NTGQAKTPAS NMERKTFLFN LLTTLKSLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [240-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRERIMFALI SGGVFLACNA VSFYFYGQEF LHEALLYHLT RTDPRHNFSI YFYHIYLHYE  60
   61 RQFSAVEKLI SFLPQFTVQF ALVFCFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [327-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDLVFCIFLQ TVAFVTFNKV ITAQYFVWFY CLLPLILPWS HMKLKWEGLL CIIMWIGAQT  60
   61 HWLLWGYMLE FKGVNVFLPL WIASLLFLAA NTFVLVRIIQ RHRFSPLFRR YESSSSSNNV 120
  121 TKED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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