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View Structure Prediction Details

Protein: BPM5_ARATH
Organism: Arabidopsis thaliana
Length: 410 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BPM5_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536843 - gi|21536843|gb|AAM61175.1| unknown [Arabidopsis thaliana]
270.0 [0..1] [410..1]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVIQGSN PDRVLSPTSS KSVTQTVNGS HQFVIQGYSL AKGMGIGKHI ASDNFSVGGY  60
   61 QWGIFFYPDG KNPEDNSSYV SVFIALASEG TEVRALFELA LVDQSGKGKH KVHSHFERSL 120
  121 DGGPYTLKYR GSMWGYKRFF RRSILETSDY LKDDCLIINC TVGVVVSEIL CPQLHSVHVP 180
  181 DSELGSHFGV LLDSMEGSDI TFNIAGEKFL AHKLVLAARS PFFKSKFFSE FEANNTEVTI 240
  241 NDLEPKVFKA LLQFMYKDSL PEDVEPATAH TFERLKLSEI YETLIVKVLA AADKYDLIRL 300
  301 RLLCESHICK GVSVKSVAKI LALADRYNAK ELKGVCLKFT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.39794
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [341-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AENLAAVLET DAYQQMKDEC VTLQSELLKA VAGHEEGSNS TGGAKSQSVW AQLSDGGGDT  60
   61 TSRHVRQRTT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 2eqxA
Description: No description for 2eqxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle