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View Structure Prediction Details

Protein: GNL2_ARATH
Organism: Arabidopsis thaliana
Length: 1375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GNL2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRIAVRAKR KELGISCMLN TEVGAVLAVI RRPLSESYLS PQETDHCDSS VQQSLKSLRA  60
   61 LIFNPQQDWR TIDPSVYLSP FLEVIQSDEI PASATAVALS SILKILKIEI FDEKTPGAKD 120
  121 AMNSIVSGIT SCRLEKTDLV SEDAVMMRIL QVLTGIMKHP SSELLEDQAV CTIVNTCFQV 180
  181 VQQSTGRGDL LQRNGRYTMH ELIQIIFSRL PDFEVRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [218-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEGGEDSESD TDEIDMSGGY GIRCCIDIFH FLCSLLNVVE VVENLEGTNV HTADEDVQIF  60
   61 ALVLINSAIE LS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [290-480]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDAIGQHPKL LRMVQDDLFH HLIHYGASSS PLVLSMICSC ILNIYHFLRK FMRLQLEAFF  60
   61 SFVLLRVTAF TGFLPLQEVA LEGLINFCRQ PAFIVEAYVN YDCDPMCRNI FEETGKVLCR 120
  121 HTFPTSGPLT SIQIQAFEGL VILIHNIADN MDREEDEGNE EDDNNSNVIK PSPVEIHEYI 180
  181 PFWIDKPKED F

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [481-872]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETWVDHIRVR KAQKRKLAIA ANHFNRDEKK GLEYLKYNYL VSDPLDPMAL ASFFRFTPGL  60
   61 DKTMIGDYLG DPDELHLSVL RSFTHTFEFT GMNLDTALRT FLESFRLPGE SQKIERMIEA 120
  121 FSERFYDQQS SDIFASKDTV HILCYSLIML NTDQHNPQVR RKMTEDEFIR NNRAINAGND 180
  181 LPKEYLSELF QSIATNAFAL STHSGPVEMN PNRWIELMNR TKTTQPFSLC QFDRRIGRDM 240
  241 FATIAGPSIA AVSAFFEHSD DDEVLHECVD AMISIARVAQ YGLEDILDEL IASFCKFTTL 300
  301 LNPYTTPEET LFAFSHDMKP RMATLAVFTL ANTFGDSIRG GWRNIVDCLL KLRKLQLLPQ 360
  361 SVIEFEINEE NGGSESDMNN VSSQDTKFNR RQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.30103
Match: 2r09A
Description: No description for 2r09A was found.

Predicted Domain #5
Region A:
Residues: [873-1082]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSLMGRFSH FLALDNVEES VALGMSEFEQ NLKVIKQCRI GQIFSKSSVL PDVAVLNLGR  60
   61 SLIYAAAGKG QKFSTAIEEE ETVKFCWDLI ITIALSNVHR FNMFWPSYHE YLLNVANFPL 120
  121 FSPIPFVEKG LPGLFRVCIK ILASNLQDHL PEELIFRSLT IMWKIDKEII ETCYDTITEF 180
  181 VSKIIIDYSA NLHTNIGWKS VLQLLSLCGR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1083-1257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPETKEQAVD ALIGLMSFNA SHLSQSSYAY CIDCAFSFVA LRNSSVEKNL KILDLMADSV  60
   61 TMLVKWYKTA STDTANSYSP ASNTSSSSSM EENNLRGVNF VHHLFLKLSE AFRKTTLARR 120
  121 EEIRNRAVTS LEKSFTMGHE DLGFTPSGCI YCIDHVIFPT IDDLHEKLLD YSRRE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1258-1375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAEREMRSME GTLKIAMKVL MNVFLVYLEQ IVESAEFRTF WLGVLRRMDT CMKADLGEYG  60
   61 DNKLQEVVPE LLTTMIGTMK EKEILVQKED DDLWEITYIQ IQWIAPALKD ELFPDEEI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle