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View Structure Prediction Details

Protein: ROGFA_ARATH
Organism: Arabidopsis thaliana
Length: 493 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGFA_ARATH.

Description E-value Query
Range
Subject
Range
gi|57869094 - gi|57869094|gb|AAW57535.1| pollen-specific kinase partner protein [Lycopersicon esculentum]
726.0 [0..27] [493..38]
ROGFB_ARATH - Rop guanine nucleotide exchange factor 11 OS=Arabidopsis thaliana GN=ROPGEF11 PE=1 SV=1
715.0 [0..42] [493..98]
gi|92874517 - gi|92874517|gb|ABE82772.1| Protein of unknown function DUF315 [Medicago truncatula]
711.0 [0..32] [493..84]
gi|113536056, gi... - gi|50252279|dbj|BAD28284.1| unknown protein [Oryza sativa Japonica Group], gi|115445491|ref|NP_00104...
704.0 [0..16] [493..40]

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Predicted Domain #1
Region A:
Residues: [1-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED  60
   61 MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK ENWRKEMGWL LSVIDHIVQF 120
  121 VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED 180
  181 ADHNGDWRRD ENWWLPVVKV PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV 240
  241 PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW 300
  301 KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD 360
  361 VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG EA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #2
Region A:
Residues: [403-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETRSESEAES EYEETEKVVA AETPNSRKLS DFIGWRLSSD TKKHSSMSDI EFFHKVEQEK  60
   61 EKPMMKSPRA LPKKFSYLAK LENMRSPSDR H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle