YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DCVR_ARATH
Organism: Arabidopsis thaliana
Length: 417 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCVR_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553818 - gi|21553818|gb|AAM62911.1| unknown [Arabidopsis thaliana]
272.0 [0..1] [417..1]

Back

Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLCSSFNVF ASYSPKPKTI FKDSKFISQF QVKSSPLAST FHTNESSTSL KYKRARLKPI  60
   61 SSLDSGISEI ATSPSFRNKS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2z5lA
Description: No description for 2z5lA was found.

Predicted Domain #2
Region A:
Residues: [81-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKDINVLVVG STGYIGRFVV KEMIKRGFNV IAVAREKSGI RGKNDKEETL KQLQGANVCF  60
   61 SDVTELDVLE KSIENLGFGV DVVVSCLASR NGGIKDSWKI DYEATKNSLV AGKKFGAKHF 120
  121 VLLSAICVQK PLLEFQRAKL KFEAELMDLA EQQDSSFTYS IVRPTAFFKS LGGQVEIVKD 180
  181 GKPYVMFGDG KLCACKPISE QDLAAFIADC VLEENKINQV LPIGGPGKAL TPLEQGEILF 240
  241 KILGREPKFL KVPIEIMDFV IGVLDSIAKI FPSVGEAAEF GKIGRYYAAE SMLILDPETG 300
  301 EYSEEKTPSY GKDTLEDFFA KVIREGMAGQ ELGEQFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 1g1aA
Description: dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.26736023026862 bayes_pls_golite062009
oxidoreductase activity 0.68812524232244 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle