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View Structure Prediction Details

Protein: gi|30686344
Organism: Arabidopsis thaliana
Length: 679 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30686344.

Description E-value Query
Range
Subject
Range
GACP2_ARATH - Gamma-tubulin complex component 2 OS=Arabidopsis thaliana GN=GCP2 PE=1 SV=1
652.0 [0..1] [679..1]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD  60
   61 TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV DPSMDLALQE LAKRIFPLCE 120
  121 YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC 180
  181 QPMMGSMRAL AAVIQQASTK QF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGSGVLNLLQ SQAKAMAGDN SVRSLLEKMT ECASNAYLSI LERWVYEGII DDPYGEFFIA  60
   61 ENRSLKKESL SQDSTAKYWS QRYSLKDTIP GFLANIAATI LTTGKYLNVM RECGHNVQVP 120
  121 ISE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [326-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSKLTIFGSN HHYLECIKAA HEFASIELVN LIKDKYDLVG RLRSIKHYLL LDQGDFLVHF  60
   61 MDIAREELNK KVHEISVEKL QSLLDLALRT TAAAADPRHE DLTCCVDRAS LLTTLGMHKD 120
  121 TDSNSIEDPM SI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [458-613]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGLETFSLSY KVQWPLSIVI SKKALSKYQL IFRFLFHCKH VERQLCGAWQ IHQGIRSMNS  60
   61 KGTAILRSSL LCRSMLKFIS SLLHYLTFEV LEPNWHVMHD RLQSTRSVDE VIQHHDFFLD 120
  121 KCLRGCLLLL PDVLKKMEKL KSVCLQYAAA TQWLIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [614-679]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSIDINSQSH PQKTMIRDTT VTESIFNFER EFNSELQSLG PVLSKGSQAE PYLTHLSQWI  60
   61 LGVSKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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