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View Structure Prediction Details

Protein: gi|30682078
Organism: Arabidopsis thaliana
Length: 566 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30682078.

Description E-value Query
Range
Subject
Range
gi|5281040, gi|7... - gi|7267930|emb|CAB78272.1| copper amine oxidase-like protein [Arabidopsis thaliana], gi|5281040|emb|...
745.0 [0..1] [566..191]

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Predicted Domain #1
Region A:
Residues: [1-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTIEEMNDI TVVPFSNADF NRTIISRGVN LTDVICFPIS CGWFGNKEEN ARVIKSQCFM  60
   61 TQGTPNFYMR PIEGLTILID LDTKQVIEIT DTGRAIPIPG STNTDYRFQK LATTDKTRPL 120
  121 NPISIEQPRG PSFVIEDNHL VKWANWEFHL KPDPRAGVVI SRVRVHDPDT HETRDVMYKG 180
  181 FVSELFVPYM DPSDAWYFKT YMDAGEYGFG LQAMPLVPLN DCPRNAAYMD GVFAAADGTP 240
  241 FVRENMVCIF ESYAGDIGWR HSESPITGIP IREVRPKVTL VVRMAASVGN YDYIIDYEFQ 300
  301 TDGLIKAKVG LSGILMVKGT TYQNKNQVEK DKDGNEEELH GTLLSENVIG VIHDHYVTFY 360
  361 LDLDVDGPDN SFVKVNLKRQ ETEPGESPRK SYLKAVRNIA KTEKDGQIKL SLYDPSEFHV 420
  421 INSGKTTRVG NPTGYKVVPR TTAASLLDHD DPPQKRGAFT NNQIWVTPYN KSEQWAGGLF 480
  481 TYQSHGDDTL AVWSDRDRDI ENKDIVVWYT LGFHHIPCQE DFPIMPTVSS SFDLKPVNFF 540
  541 ERNPILSAAP NFEHDLPVCG VQSVSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1w2zA
Description: PSAO and Xenon
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142231613649539 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle