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View Structure Prediction Details

Protein: RBOHI_ARATH
Organism: Arabidopsis thaliana
Length: 941 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RBOHI_ARATH.

Predicted Domain #1
Region A:
Residues: [1-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSFSGGTH NDRWGSDLAS AGEFTQSFPS LPATYSPSPS SSSSSGEELL EVTIEFPSGV  60
   61 IINIDSVTGT GTDISGTDLE ITSCSDSGSG SRSLSLGWSA SSERLTAGTN SKQQIQKISR 120
  121 RGYGYSSRSA PEPVVPHRGE ITDSVNLPRA LSQRPTRPNR DGSGTERAIH GLKFISSKEN 180
  181 GIVDWNDVQN NFAHLSKDGY LFKSDFAHCI GLENENSKEF ADELFDALCR RRRIMVDKIN 240
  241 LQELYEFWYQ ITDESFDSRL QIFFNMVKNG DGRITENEVK EIIILSASAN NLSRLRERAE 300
  301 EYAALIMEEL APDGLYSQYI ELKDLEILLL EKDISHSY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1ij5A
Description: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [339-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPFSQTSRA LSQNLKDRRW RMSRNLLYSL QDNWKRIWVL TLWFVIMAWL FMWKCYQYKH  60
   61 KDAFHVMGYC LVMAKGAAET LKFNMALILL PVCRNTITYL RSTALSHSVP FDDCINFHKT 120
  121 ISVAIISAML LH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [471-941]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATSHLACDFP RILASTDTDY KRYLVKYFGV TRPTYFGLVN TPVGITGIIM VAFMLIAFTL  60
   61 ASRRCRRNLT KLPKPFDKLT GYNAFWYSHH LLLTVYVLLV IHGVSLYLEH KWYRKTVWMY 120
  121 LAVPVLLYVG ERIFRFFRSR LYTVEICKVV IYPGNVVVLR MSKPTSFDYK SGQYVFVQCP 180
  181 SVSKFEWHPF SITSSPGDDY LSIHIRQRGD WTEGIKKAFS VVCHAPEAGK SGLLRADVPN 240
  241 QRSFPELLID GPYGAPAQDH WKYDVVLLVG LGIGATPFVS ILRDLLNNII KQQEQAECIS 300
  301 GSCSNSNISS DHSFSCLNSE AASRIPQTQR KTLNTKNAYF YWVTREQGSF DWFKEIMNEI 360
  361 ADSDRKGVIE MHNYLTSVYE EGDTRSNLLT MIQTLNHAKN GVDIFSGTKV RTHFGRPKWK 420
  421 KVLSKISTKH RNARIGVFYC GVPSLGKELS TLCHEFNQTG ITRFDFHKEQ F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.045757
Match: 1cqxA
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle