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View Structure Prediction Details

Protein: gi|24762209, gi|...
Organism: Arabidopsis thaliana
Length: 281 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24762209, gi|....

Description E-value Query
Range
Subject
Range
WRK41_ARATH - Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2
292.0 [0..1] [281..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA  60
   61 SITGNPRSEE FFNVRSKEFN LSSKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKMLPKWTEQ VRISPERGLE GPHDDIFSWR KYGQKDILGA KFPRSYYRCT FRNTQYCWAT  60
   61 KQVQRSDGDP TIFEVTYRGT HTCSQGIPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [175-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEKRETKPKH TVAVNYQNLR ASLTVRTGGL GSEAFSFPVT SPLYTYESIN GGGTFYHHVG  60
   61 SSGPSDFTGL ISTNTSTGSS PIFDVNFQFD PTAEINTGFP TFFHNSI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle