| Protein: | PSD3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 635 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
463.0 | [0..1] | [635..1] |
|
|
377.0 | [0..188] | [634..118] |
|
|
364.0 | [0..45] | [625..3] |
|
|
355.0 | [0..67] | [634..435] |
|
|
351.0 | [0..7] | [632..370] |
|
|
351.0 | [0..31] | [634..354] |
|
|
350.0 | [0..252] | [635..654] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MGNGNSTETK ESRRSKMRKK IQNFRSRRRL SRPGSGSVSG LASQRSVSAD DFAGIALLTL 60
61 IGAEMKFKDK WLACVSFGEQ TFRSEISDST EKPIWNSEKK LLLEKNGPSL ARISVFETNR 120
121
|
| Detection Method: |  |
| Confidence: | 17.30103 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [121-294] |
1 11 21 31 41 51
| | | | | |
1 LLKNNIVGYC ELDLLDFVVQ EPDSTCKSFD LLDPASSNVV GSMFVSCSVE DPVETETCFA 60
61 KRILSIVDYD EDGKLSFSEF SDLMNAFGNV VAANKKEELF KAADLNGDGV VTIDELAALL 120
121 AVQQEQEPII NSCPVCGEAL QLDKLNAMIH MTLCFDEGTG NQMTGGFLTD RQAS
|
| Detection Method: | |
| Confidence: | 12.39794 |
| Match: | 1s1eA |
| Description: | Crystal Structure of Kv Channel-interacting protein 1 (KChIP-1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [295-330] |
1 11 21 31 41 51
| | | | | |
1 YGWMFKLSEW THLSTYDVGL NTGSSASHIV VIDRKT
|
| Detection Method: | |
| Confidence: | 3.221849 |
| Match: | 1y1xA |
| Description: | Structural analysis of a homolog of programmed cell death 6 protein from Leishmania major Friedlin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [331-409] |
1 11 21 31 41 51
| | | | | |
1 KRLVEELIDS KIVMSMRAIY QSKIGLRLMD QGAKEILQNL SEKQGKKMNS VESAQNIPSF 60
61 LEFFKDQINM AEVKYPLDH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.829 | a.7.16 | Description not found. |
|
Region A: Residues: [410-635] |
1 11 21 31 41 51
| | | | | |
1 FKTFNEFFVR ELKPGARPIA CMDQDDVAVS AADCRLMAFQ SVDDSTRFWI KGRKFSIKGL 60
61 LGNDVQSDAF LDGSLVIFRL APQDYHRFHS PVSGVIEKFV NVSGSLYTVN PIAVNSKYCN 120
121 VFTENKRTIV IISTAEFGKV AFVAIGATMV GSISFVRQEG DHVKKGDELG YFSFGGSTVI 180
181 CVFEKDSIKI DEDLLANSAR SLETLVTVGM QLGVSFPKLE NCVLEP
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 2gprA |
| Description: | GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM |
Matching Structure (courtesy of the PDB): |
|
