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View Structure Prediction Details

Protein: CB60D_ARATH
Organism: Arabidopsis thaliana
Length: 601 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CB60D_ARATH.

Description E-value Query
Range
Subject
Range
CB60B_ARATH - Calmodulin-binding protein 60 B OS=Arabidopsis thaliana GN=CBP60B PE=2 SV=1
945.0 [0..2] [592..13]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNFERNDD DKPERKRPAL ASVIVEALKV DSLQKLCSSL EPILRRVVSE EVERALAKLV  60
   61 PTRLTTSSVF SPKRIGGPDG RNLQLHFKSR LSLPLFTGGR VEGEQGATIH VVLIDANTGR 120
  121 PVTVGPEASL KLEVVVLGGD FNNEDDEDWT QEEFESHVVK EREGKRPLLT GDLFVVLKEG 180
  181 VGTLGEIVFT DNSSWIRSRK FRLGLRVPSG YCDGIRIREA KTEAFSVKDH RGELYKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [238-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYPPALNDEV WRLEKIGKDG AFHKRLTAAG IVTVEGFLRQ LVRDSTKLRA ILGSGMSNKM  60
   61 WDLLVEHAKT CVLSGKLYIY YTEDSRSVGV VFNNIYELSG LITEDQYLSA DSLSESQKVY 120
  121 VDGLVKKAYE NWNQVVEYEG ESLLNL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [384-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQPERLDISQ TDPVTALASY STVPLSQFPE FAIEGYNQTL TTALPHNPQA QFDFVPQQDQ  60
   61 FIGIQQPQTQ TNIENEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [461-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTRLVLGPPQ SSTGGYQDIK SSADQENLNP FEDWTNLSEN DFFSEEEIRQ TSHDLLANED  60
   61 MQQLLFSMGG GKGEDGFTFP SFMQNTPMMQ GYDEEGRGRS GKAVVGWLKV KAAMRWGFFI 120
  121 RRKAAERRAQ IVELHDNNDG K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle