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View Structure Prediction Details

Protein: ENDO4_ARATH
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENDO4_ARATH.

Description E-value Query
Range
Subject
Range
ENDO5_ARATH - Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1
434.0 [0..5] [298..1]

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Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLRQWFA RVLVLTQLIN GALCWGKEGH YTVCKIAESY FEEETVAAVK KLLPKSADGD  60
   61 LASVCSWPDE IKHHWQWRWT SPLHYVDTPD YRCNYEYCRD CHDTHKNQDR CVTGAIFNYT 120
  121 MQLMSASENS DTIVHYNLTE ALMFLSHFIG DIHQPLHVGF LGDEGGNTIT VRWYRRKTNL 180
  181 HHVWDNMIIE SALKTYYNKS LPLMIEALQA NLTNDWSNDV PLWESCQLNQ TACPNPYASE 240
  241 SINLACKYAY RNATPGTTLG DDYFLSRLPI VEKRLAQGGI RLAATLNRIF SSKPKHAGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1ak0A
Description: P1 NUCLEASE IN COMPLEX WITH A SUBSTRATE ANALOG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.237569247811196 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle