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View Structure Prediction Details

Protein: gi|42572791, gi|...
Organism: Arabidopsis thaliana
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572791, gi|....

Description E-value Query
Range
Subject
Range
gi|41205692 - gi|41205692|gb|AAR99612.1| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]
221.0 [0..3] [252..1]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKTKVLIV GGTGYLGQHL LQAFAGNYGG ECELYDVAFT HHSSPLPARL LDAFPHSPAF  60
   61 PVDLKSGLGL NSISQDFRQP DVVVNCAALS VPRACEQDPD SAMSINVPTS LVNWLSSFET 120
  121 NKTLLIHLST DQVYQGVKSF YKEEDETVAV NVYGKSKVAA ELLIKDKCQS FAILRSSIIF 180
  181 GPQTVSPLPK TLPIQWIDSS LKKGDTVDFF HDEFRCPIYV KDLVNITFKL IDRWVSGRFF 240
  241 FTEFHSLALH HCT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 1bxkA
Description: dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.26736023026862 bayes_pls_golite062009
oxidoreductase activity 0.68812524232244 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle