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View Structure Prediction Details

Protein: ROGF3_ARATH
Organism: Arabidopsis thaliana
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGF3_ARATH.

Description E-value Query
Range
Subject
Range
ROGF2_ARATH - Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2
778.0 [0..1] [473..1]
gi|125572637, gi... - gi|56784047|dbj|BAD82675.1| hypothetical protein [Oryza sativa Japonica Group], gi|125572637|gb|EAZ1...
696.0 [0..72] [473..35]
gi|87240977 - gi|87240977|gb|ABD32835.1| Protein of unknown function DUF315 [Medicago truncatula]
678.0 [0..11] [473..14]
gi|116311123, gi... - gi|125549319|gb|EAY95141.1| hypothetical protein OsI_16959 [Oryza sativa Indica Group], gi|116311123...
653.0 [0..48] [471..36]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET  60
   61 NSFCSEASPC NWPVLT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESKSSKCLSG LEMQSNECLV VQEISEPELE TMKERFAKLL LGEDMSGSGK GVCTAVTISN  60
   61 AITNLYATVF GQNLRLEPLE TEKRALWKRE MNCLLSVCDY IVEFIPRCQN LSNGATVEVM 120
  121 ESRPRADIYI NLPALRKLDS MLMEALDSFQ NTEFWYAEEG SLSMKSARSS TGSFRKVIVQ 180
  181 RKEEKWWLPV PLVPSEGLSD KARKQLKNKR ESTNQIHKAA MAINSSILSE MEIPDSYMTT 240
  241 LPKCGKSSVG DSIYRYMSGS GRFFPEQLLD CLNISSEHEA VQLADRVEAS MYTWRRKSCL 300
  301 SNSKNSWNMV KDLMSTTERT DKNYVMAERA ETLLFCLKQR YPELSQTSLD ICKIQYNKDV 360
  361 GKAVLESYSR VLEGLAFNIV AWIDDVLYVD KTMRGSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 177.0
Match: 2ntxA
Description: No description for 2ntxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle