YRC Public Data Repository - Protein Structure Prediction

Protein:	DDB1B_ARATH
Organism:	Arabidopsis thaliana
Length:	1088 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDB1B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|62318656 - gi\|62318656\|dbj\|BAD95136.1\| UV-damaged DNA-binding protein- like [Arabidopsis thaliana]	1082.0	[0..1]	[1088..1]
gi\|215694552, gi... - gi\|50932983\|ref\|XP_476019.1\| putative DNA damage binding protein 1 [Oryza sativa (japonica cultivar-...	1047.0	[0..1]	[1088..1]
DDB1_SOLLC - DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1	1043.0	[0..1]	[1088..1]
DDB1_SOLCE - DNA damage-binding protein 1 OS=Solanum cheesmaniae GN=DDB1 PE=3 SV=1	1039.0	[0..1]	[1088..1]
gi\|73983859 - gi\|73983859\|ref\|XP_533275.2\| PREDICTED: similar to DNA damage binding protein 1 (Damage-specific DNA... tr\|M3XDV7\|M3XDV7... - Damage specific DNA binding protein 1 OS=Felis catus GN=DDB1 PE=4 SV=1	1015.0	[0..1]	[1088..1]
DDB1_MOUSE - DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2	1015.0	[0..1]	[1088..1]

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Predicted Domain #1

Region A:
Residues: [1-1088]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG  60
   61 RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI TRAMGDVSDR IGRPTDNGQI 120
  121 GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL 180
  181 YQDNKDARHV KTYEVSLKDK NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC 240
  241 SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET 300
  301 SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE 360
  361 RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS 420
  421 FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR 480
  481 NKWDAPAGFS VNVATANASQ VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI 540
  541 GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL 600
  601 GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL 660
  661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP IGEHARRICH 720
  721 QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK 780
  781 NVYYCVGTAY VLPEENEPTK GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN 840
  841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA 900
  901 IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG 960
  961 EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS LPQEQYAFLE KLQTSLRKVI1020
 1021 KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR1080
 1081 VEELTRLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	3e0cA
Description:	No description for 3e0cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits