YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|88900388, gi\|...
Organism:	Arabidopsis thaliana
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88900388, gi|....

Description	E-value	Query Range	Subject Range
gi\|21537074 - gi\|21537074\|gb\|AAM61415.1\| unknown [Arabidopsis thaliana]	281.0	[0..1]	[148..1]
gi\|60472066, gi\|... - gi\|66820939\|ref\|XP_644012.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60472066\|gb\|EAL... gi\|28828406, gi\|... - gi\|60472066\|gb\|EAL70019.1\| hypothetical protein DDB0167811 [Dictyostelium discoideum], gi\|28828406\|g...	152.0	[0..23]	[126..74]
gi\|215765938, gi... - gi\|53981170\|gb\|AAV24810.1\| unknown protein [Oryza sativa Japonica Group], gi\|215765938\|dbj\|BAG98166....	145.0	[0..2]	[121..4]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAFVDRAW DKWVTTGNVG SSGNPLKAAI LINYDPTGPS RLLSTIAKQE GIDIYPVDLK  60
   61 QFIDFMRCGN LPTETFVLGS NQYIITSIHE NWFAARCLNT SQPAGEGAIV MQTAVYVLVA 120
  121 LYDGSIGSAS QAMAAADQFA SQLSRKNF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.02
Match:	1acfA
Description:	ACANTHAMOEBA CASTELLANII PROFILIN IB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits