YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15236046
Organism:	Arabidopsis thaliana
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15236046.

Description	E-value	Query Range	Subject Range
gi\|83723946, gi\|... - gi\|83749369\|ref\|ZP_00946364.1\| Formyltetrahydrofolate deformylase [Ralstonia solanacearum UW551], gi...	292.0	[0..40]	[328..26]
gi\|17546592 - gi\|17546592\|ref\|NP_519994.1\| formyltetrahydrofolate deformylase [Ralstonia solanacearum GMI1000] gi\|17428891 - gi\|17428891\|emb\|CAD15575.1\| probable formyltetrahydrofolate deformylase protein [Ralstonia solanacea...	289.0	[0..45]	[328..6]
PURU1_ARATH - Formyltetrahydrofolate deformylase 1, mitochondrial OS=Arabidopsis thaliana GN=PURU1 PE=1 SV=1	289.0	[0..1]	[328..1]
gi\|89257492 - gi\|89257492\|gb\|ABD64983.1\| formyltetrahydrofolate deformylase, putative [Brassica oleracea]	289.0	[0..3]	[328..10]
gi\|29607500, gi\|... - gi\|29830389\|ref\|NP_825023.1\| formyltetrahydrofolate deformylase [Streptomyces avermitilis MA-4680], ...	288.0	[0..32]	[328..3]
gi\|117927364, gi... - gi\|88932266\|ref\|ZP_01137958.1\| Formyltetrahydrofolate deformylase [Acidothermus cellulolyticus 11B],...	287.0	[0..42]	[328..1]
gi\|27354232, gi\|... - gi\|27381066\|ref\|NP_772595.1\| formyltetrahydrofolate deformylase [Bradyrhizobium japonicum USDA 110],...	286.0	[0..42]	[328..3]
gi\|68346410, gi\|... - gi\|70732111\|ref\|YP_261867.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf-5], gi\|6...	286.0	[0..40]	[328..11]
gi\|83360838, gi\|... - gi\|83369484\|ref\|ZP_00914338.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	284.0	[0..42]	[328..1]
gi\|110594248, gi... - gi\|110594248\|ref\|ZP_01382595.1\| formyltetrahydrofolate deformylase [Acidovorax sp. JS42], gi\|1103364...	283.0	[0..15]	[328..97]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRVSTTSC LSATAFRSFT KWSFKSSQFH GESLDSSVSP LLIPGFHVFH CPDVVGIVAK  60
   61 LSDCIAAKGG NILGYDVLVP ENKNVFYSRS EFIFDPVKWP RRQMDEDFQT IAQKFSALSS 120
  121 VVRVPSLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.045757
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [129-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKYKIALLLS KQDHCLVEML HKWQDGKLPV DITCVISNHE RAPNTHVMRF LQRHGISYHY  60
   61 LPTTDQNKIE EEILELVKGT DFLVLARYMQ LLSGNFLKGY GKDVINIHHG LLPSFKGRNP 120
  121 VKQAFDAGVK LIGATTHFVT EELDSGPIIE QMVERVSHRD NLRSFVQKSE DLEKKCLMKA 180
  181 IKSYCELRVL PYGTQRTVVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	1c3eA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits