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View Structure Prediction Details

Protein: gi|57222174, gi|...
Organism: Arabidopsis thaliana
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57222174, gi|....

Description E-value Query
Range
Subject
Range
gi|98960971, gi|... - gi|98960971|gb|ABF58969.1| At4g17350 [Arabidopsis thaliana], gi|54606846|gb|AAV34771.1| At4g17350 [A...
533.0 [0..22] [429..8]
gi|89257648 - gi|89257648|gb|ABD65135.1| hypothetical protein 40.t00010 [Brassica oleracea]
493.0 [0..22] [429..9]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYDRTLNLI PYGLQGVREE EEIEEDDEES MTLSSVPENE TSECSSPPAT YPPIPPRPKT  60
   61 PREPMEFLCR SWSLSTSEIS LALSSQKSDK QLNKNPNISQ LADVTSLAPV APPPPLQTGK 120
  121 LASAVHARRT GT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGKWFHHREF VGGKVSAVKK RDRVRVEKAH LHSAVSIASL ATAIAAVTAS GNQDGFAGSK  60
   61 MSSALASASE LLASHCLELA ELAGADHDRV VSAVRSAVDV RGPGDLLTLT AAAATALRGE 120
  121 AALRVRLPKE AKNSAAISPC ERVLPETHSC SSELDRTSTT DELISAKGVE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESTGELMQCT RNGVLRWKHV KVYINKKSQV IVEIKSKHVV GAFSMKSKGI VNDVCETVSG  60
   61 LQNGKDTENT EEELYFGIGT GKGLTKFKCK SKADKQTWVD SIRNLLHRVT AVEVDTSLET 120
  121 ININDST

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.124939
Match: PF08458.1
Description: No description for PF08458.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle