| Protein: | PCFS4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 808 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCFS4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
726.0 | [0..1] | [798..1] |
|
Region A: Residues: [1-260] |
1 11 21 31 41 51
| | | | | |
1 MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP 60
61 SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG IANAICTRIL EAPVEQKLPS 120
121 LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK 180
181 IDMQLQLSSA ANQSSVGASE PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN 240
241 SLGGYNDFED QLESPSSLSS
|
| Detection Method: |  |
| Confidence: | 42.522879 |
| Match: | 1sz9A |
| Description: | The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.229007340928547 | bayes_pls_golite062009 |
|
Region A: Residues: [261-370] |
1 11 21 31 41 51
| | | | | |
1 TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK ENLGQGNDHE RPRALIDAYG 60
61 VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [371-628] |
1 11 21 31 41 51
| | | | | |
1 EFLRSSVPAL GSVRARPRVG NTSDFHLDSD IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA 60
61 GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA 120
121 HLHHLANPGN AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS 180
181 LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF SGLIGSLMAQ 240
241 GLISLNNQPA GQGPLGLE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [629-808] |
1 11 21 31 41 51
| | | | | |
1 FDADMLKIRN ESAISALYGD LPRQCTTCGL RFKCQEEHSK HMDWHVTKNR MSKNHKQNPS 60
61 RKWFVSASMW LSGAEALGAE AVPGFLPTEP TTEKKDDEDM AVPADEDQTS CALCGEPFED 120
121 FYSDETEEWM YKGAVYMNAP EESTTDMDKS QLGPIVHAKC RPESNGGDME EGSQRKKMRS 180
181
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
