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View Structure Prediction Details

Protein: CSLB5_ARATH
Organism: Arabidopsis thaliana
Length: 757 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLB5_ARATH.

Description E-value Query
Range
Subject
Range
gi|9622882, gi|1... - gi|9622882|gb|AAF89965.1|AF200529_1 cellulose synthase-5 [Zea mays], gi|162460565|ref|NP_001104955.1...
713.0 [0..3] [755..250]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSSSLHP LCERISHKSY VLRAVDLTIL GLLYSLLLYR ILHISENDNV WLLAFFCESC  60
   61 FSLVWLIFTC LKWSPAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIPYINTLNE RVHDLPSLDM FVPTADTVRE SPIITVNTVL SLLAVNYPAN KLACYVSDDG  60
   61 CSPLTYFSLK EASKFVKIWA PFCKKYNVRV RAPFRYFLNP LVATDDSVFS KDWKMMKREY 120
  121 VKLCRKVEDA TGDSHWLDAD DDFEAFSNTK PNDHSTIVKV VWENKGGVGD EKEVPHLVYI 180
  181 SREKRPNYLH HYKTGAMNFL LRVSGLMTNA PYTLNVDCDM YANEPDVVRQ AMCVFLQNSK 240
  241 NSNHCAFVQF PQKFYDSYTN ELAVLQSILG RGVAGIQGPF YIGTGCFHTR RVMYGLSSDD 300
  301 LEDNGNISQV ATREFLAEDS LVRKYGNSKE LVKSVVDALQ RKSNPQKSLA NLIEAAQEVG 360
  361 HCHYEYQTSW GNLGWMYDSV AEDINTSVGI HLRGWTSSFI SPDPPAFIGS TPTLGLEAIV 420
  421 QQRRWATGAI EVLFNKQSPF MGM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.2
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #3
Region A:
Residues: [521-757]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHGKIKFRQR LAYFWALMCL RSIPELIYCL LPAYCLLHDS ALFPKGPCLC TIVTLVGMHC  60
   61 LYSLWQFMSL GFSVQSWYVV QSLWRIIATS SWLFSIQDII LKLLGISQIG FVIAKKTIPE 120
  121 TKSVYESKPS QGEDDVPKLN LGKFEFDSSG LFIPGTFIML VNLAALAGYL VRLQRSSCSH 180
  181 GGGGSGLAEA CGCILVVMLF LPFLKGLFEH GKYSIPLSTL SKAAFLTVLF VFFCVGK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle