YRC Public Data Repository - Protein Structure Prediction

Protein:	PUM4_ARATH
Organism:	Arabidopsis thaliana
Length:	1003 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUM4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|6056191 - gi\|6056191\|gb\|AAF02808.1\|AC009400_4 putative RNA binding protein [Arabidopsis thaliana]	648.0	[0..1]	[986..1]
gi\|24159015, gi\|... - gi\|24159016\|pdb\|1M8Y\|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio1...	530.0	[0..645]	[987..2]
gi\|92885524 - gi\|92885524\|gb\|ABE87830.1\| Nucleic acid binding NABP [Medicago truncatula]	521.0	[0..20]	[990..15]
gi\|109000900 - gi\|109000900\|ref\|XP_001096411.1\| PREDICTED: similar to pumilio 1 isoform 2 isoform 2 [Macaca mulatta...	519.0	[0..117]	[987..194]
gi\|73950046 - gi\|73950046\|ref\|XP_865198.1\| PREDICTED: similar to pumilio 1 isoform 1 isoform 8 [Canis familiaris]	519.0	[0..117]	[987..139]
gi\|94392568 - gi\|94392568\|ref\|XP_983747.1\| PREDICTED: similar to pumilio homolog 2 isoform 5 [Mus musculus]	518.0	[0..641]	[988..1]

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Predicted Domain #1

Region A:
Residues: [1-643]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTNSYMDTR SNLTSVNRGS NVDLEDRFQR ELESLLQQHR NQQSFGRERE RDIDVHRSGS  60
   61 APPTVEGLLR AMDNQYLNNN NSDHRDVGNI SSITTSNGVE LLSDDELRWH PEYLSYYYSN 120
  121 EHSNPRLPPP LLSREDWRVA QRFHNSESVF DPVGEWRKKT VEVDNSSSLF SVQPGVPVEQ 180
  181 AENDLMELRN AVAQGRSQKV QRLDQGREDL IGLSGYSGLG PRRKSFADIL QEGLERDAAL 240
  241 GSQLSRPASC NTFRDMKDAA VLSNFSAGGF DSPLAFHDSL HSTAKNSPNT MLGSTMSSPV 300
  301 PRNRTPDSHL VGRSTASGLP PIGTRVGPVE KKNTFGTAIQ NCESYTAADV ADTLSRLNMS 360
  361 EMSQVKENHM QSQLQVELEN QSDVMRYIPN GHKKALRQQN TAETKDHLFS ANYGGMSGYG 420
  421 ASLGASTVGS HGQVNIPKRT SSSASLYSTS DHSRLGSVGL SDVNIRNGNI NGTDFSTAGG 480
  481 YMAKNKLNSL AEHYSAEGSH LTGDGDRQSL NRLINQVASE LHSPVMDPHY SQYLHTASST 540
  541 AAPIDHSLIR NNFGTSNGDT ANEYLAMLLA QNRQQLGNLN AANSRFFESP SYDLGNMYLG 600
  601 NHLPSPSKNS RNFQNMRMSQ SASMMKVPFG GLQGSSHVDI GST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [644-1003]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEASLLEGFK NNKTRSLELS EIVGHVIEFS MDQYGSRFIQ QKLETATDEE KNAIFPEILP  60
   61 YGRTLMTDVF GNYVIQKFFE HGTTKQRKEL AEQVTGHVLA LSLQMYGCRV IQKALEVVEL 120
  121 EQQARMVKEL DGSVMKCVHD QNGNHVIQKC IERLPQDWIQ FIISSFYGKV LALSTHPYGC 180
  181 RVIQRVLEHI DDIETQRIIM EEIMDSVCTL AQDQYGNYVI QHIIQHGKPH ERSEIINKLA 240
  241 GQIVKMSQQK FASNVVEKCL TFGGPEERQV LVNEMLGYTD ENEPLQAMMK DPFGNYVVQK 300
  301 VLETCDDQSL ALILSRIKVH LNALKRYTYG KHIVARVEKL ITTGERRIGL SSSLAANTTP 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	151.0
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits