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View Structure Prediction Details

Protein: gi|30695009
Organism: Arabidopsis thaliana
Length: 269 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30695009.

Description E-value Query
Range
Subject
Range
gi|110743793 - gi|110743793|dbj|BAE99732.1| hypothetical protein [Arabidopsis thaliana]
321.0 [0..1] [269..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNNMGPRPG MAMPQANPQP SPFGNPFSGP GSGLIRSGLG AYGEKIFGSS SEYVQSNISR  60
   61 YFSDPQYYFQ VNDQYVRNKL KIVLLPFLHR GHWTRISEPV GGRLSYKPPI YDINAPDLYI 120
  121 PLMAFGTYVV LAGLSLGLYG K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.466 N/A N/A d.13.1 HIT-like
View Download 0.451 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.444 N/A N/A d.201.1 SRP19
View Download 0.432 N/A N/A b.55.1 PH domain-like
View Download 0.418 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

Predicted Domain #2
Region A:
Residues: [142-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTPEALNWLF VKGMVGWFLQ VMLLKITLLS LGSGEAPLLD IVAYAGYTFT GLCLAVLGKI  60
   61 IWGYSYYVLI PWTCLCTGVF LVKTMKRVLF AESRSYDSSR HHYLLIFVAL AQFPLLIWLG 120
  121 NISVNWLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle