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View Structure Prediction Details

Protein: PDCB5_ARATH
Organism: Arabidopsis thaliana
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDCB5_ARATH.

Description E-value Query
Range
Subject
Range
gi|6735322, gi|1... - gi|6735322|emb|CAB68148.1| putative protein [Arabidopsis thaliana], pir||T45970 hypothetical protein...
223.0 [0..1] [180..77]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMSLPQCSH LRLSILAATA AMLMVITTAQ IGGQVIQVEL WCVAKNNAED SSLQTAIEWA  60
   61 CGQGGADCGP IQQGGPCNDP TDVQKMASFV FNNYYLKNGE EDEACNFNNN AALTSLNPSQ 120
  121 GTCKYPSSKG ANNGRLADDT SMGAGQADMS RGGRPISSSW MVTFIGFGSL LTMTWIIHHL 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 37.769551
Match: PF07983.4
Description: No description for PF07983.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.595 N/A N/A d.55.1 Ribosomal protein L22
View Download 0.571 N/A N/A a.74.1 Cyclin-like
View Download 0.478 N/A N/A d.150.1 4'-phosphopantetheinyl transferase
View Download 0.465 N/A N/A a.4.12 TrpR-like
View Download 0.443 N/A N/A d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain


YRC Informatics Platform - Version 3.0
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