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View Structure Prediction Details

Protein: RBL4_ARATH
Organism: Arabidopsis thaliana
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL4_ARATH.

Description E-value Query
Range
Subject
Range
gi|11357824, gi|... - gi|7629998|emb|CAB88340.1| putative protein [Arabidopsis thaliana], pir||T45918 hypothetical protein...
309.0 [0..32] [394..4]

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Predicted Domain #1
Region A:
Residues: [1-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE  60
   61 FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF LGRFSFQNTR ENPLLGPSSL 120
  121 TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL 180
  181 LYLISGFGGS ILSALFLRSN ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI 240
  241 VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 2ic8A
Description: No description for 2ic8A was found.

Predicted Domain #2
Region A:
Residues: [290-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPHRFKIYQG ILWTISLLIL VAGFIVGLIS LFNNVDGNEH CSWCHYLSCV PTSKWSCNRE  60
   61 PASCTTTQLG NQLSMTCLRN GKSASYILAN PSDSRINSLC VQLCR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 1j0pA
Description: Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.663751106063743 bayes_pls_golite062009
catalytic activity 0.223774911842048 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle