YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AATPC_ARATH
Organism: Arabidopsis thaliana
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AATPC_ARATH.

Description E-value Query
Range
Subject
Range
gi|37528354, gi|... - gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp. laumondi...
292.0 [0..39] [449..3]

Back

Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSESHLA TAKTALTAVA SVAAAAILAR SVVQDYMPNE VHEYISHGFR RFFSYFSYQM  60
   61 TAVIEEFGGF EHNQVFEAAE AYLSTKISNS TRRIKVNKLE KQSNYSVTVE RDEEVVDIFD 120
  121 GVKLSWILVC RHVDKKDFRN PRDLNSTLKS EVRSYELSFR KKFKNMVLES YLPFVVEQAA 180
  181 SIKQKFKTLK IFTVDSYSVE WTSVTLDHPS TFRTLALDPE VKKNLVEDLD RFVQRKGFYG 240
  241 RVGKAWKRGY LLYGPPGTGK SSLIAAIANH LNFDIYDLDL TSLNNNAELR RLLMSTANRS 300
  301 ILVVEDIDCS IELKDRSTDQ ENNDPLHKTV TLSGLLNFVD GLWSSCGNER IIVFTTNYRE 360
  361 KLDPALLRPG RMDMHIHMSY CTPAAFKVLA SNYLEIQDHI LFEQIEEFIR EIEVTPAEVA 420
  421 EQLMRSDSVD KVLQGLVEFL KAKKQIDNSK A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle