YRC Public Data Repository - Protein Structure Prediction

Protein:	SC24C_ARATH
Organism:	Arabidopsis thaliana
Length:	1096 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC24C_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114631255, gi... - gi\|114631255\|ref\|XP_001145134.1\| PREDICTED: SEC24-related protein C isoform 11 [Pan troglodytes], gi...	961.0	[0..9]	[1096..8]
gi\|73952949, gi\|... - gi\|73952949\|ref\|XP_862907.1\| PREDICTED: similar to SEC24-related protein C isoform 7 [Canis familiar...	959.0	[0..8]	[1096..7]
SEC24C - SEC24 family, member C (S. cerevisiae)	959.0	[0..9]	[1096..8]
gi\|197101962 - gi\|197101962\|ref\|NP_001126728.1\| SEC24-related protein C [Pongo abelii] gi\|55732471 - gi\|55732471\|emb\|CAH92936.1\| hypothetical protein [Pongo abelii]	954.0	[0..9]	[1096..8]
gi\|76656555 - gi\|76656555\|ref\|XP_586458.2\| PREDICTED: similar to SEC24-related protein C isoform 1 [Bos taurus]	953.0	[0..8]	[1096..7]
gi\|28916673, gi\|... - gi\|28916673\|ref\|NP_766184.1\| Sec24 related gene family, member C [Mus musculus], gi\|25955503\|gb\|AAH4...	952.0	[0..8]	[1096..7]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVPPGAY RPNNNQQNSG GPPNFVPGSQ GNPNSLAANM QNLNINRPPP PMPGSGPRPS  60
   61 PPFGQSPQSF PQQQQQQPRP SPMARPGPPP PAAMARPGGP PQVSQPGGFP PVGRPVAPPS 120
  121 NQPPFGGRPS TGPLVGGGSS FPQPGGFPAS GPPGGVPSGP PSGARPIGFG SPPPMGPGMS 180
  181 MPPPSGMPGG PLSNGPPPSG MHGGHLSNGP PPSGMPGGPL SNGPPPPMMG PGAFPRGSQF 240
  241 TSGPMMAPPP PYGQPPNAGP FTGNSPLSSP PAHSIPPPTN FPGVPYGRPP MPGGFPYGAP 300
  301 PQQLPSAPGT PGSIYGMGPM QNQSMTSVSS PSKIDLNQIP RPGSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [346-1096]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPIVYETRV ENKANPPPPT TVDYITRDTG NSSPRYMRCT INQIPCTVDL LSTSGMQLAL  60
   61 IVQPMALSHP SEEPIQVVDF GESGPVRCSR CKGYVNPFMK FIDQGRKFIC NLCGYTDETP 120
  121 RDYQCNLGPD GRRRDADERP ELCRGTVDFV ATKEYMVRDP MPAVYFFLID VSMNAIQTGA 180
  181 TAAACSAIQQ VLSDLPEGPR TFVGIATFDS TIHFYNLKRA LQQPLMLIVP DVQDVYTPLE 240
  241 TDVIVQLSEC RQHLEILLES IPTMFQESKS PESAFGAAVK AAFLAMKSTG GKLMVFQSVL 300
  301 PSVGIGALSS READGRANAS AGEKEAHKLL QPADKTLRTM AIEFAEYQVC VDLFITTQAY 360
  361 VDMASISEIP RTTGGQVYCY YPFSALSDPP KLYNDLRWNI TRPQGFEAVM RVRCSQGIQV 420
  421 QEYSGNFCKR IPTDIDLPAI DCDKAIMVTL KHDDKLQDGA ECGFQCALLY TTISGERRIR 480
  481 VLNLSIPCTN MLSNLFRSAD LDSQFACMLK QAANEIPSKA LPLVKEQATN DCITILHSYR 540
  541 KFCATVTSTG QLILPEALKL LPLYTLALTK GVGLRMDGRI DDRSFWINHV SSLSTPLAIP 600
  601 LVYPRMIAVH DLDANDNEEN VVPCPIPLQS EHLSDEGVYF LENGEDGLIY IGESVNSDIL 660
  661 QKLFNVRSAA ELPSQYVLQK YDNQLSKKFN DVVNEIRRQR SSYLRIKLCK KGDPAGNMLF 720
  721 QSYMVEDRGS GGASYVDFLV SVHRQIQHKL N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	3eh2A
Description:	No description for 3eh2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits