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View Structure Prediction Details

Protein: NUD13_ARATH
Organism: Arabidopsis thaliana
Length: 202 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUD13_ARATH.

Description E-value Query
Range
Subject
Range
gi|42781140, gi|... - gi|42781140|ref|NP_978387.1| mutT/nudix family protein [Bacillus cereus ATCC 10987], gi|42737061|gb|...
126.0 [0..3] [170..68]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLSARTGR DHQRYDNNFR LVSGCIPYRL VKDEEEDSTS VDFENKLQVL MISSPNRHDL  60
   61 VFPKGGWEDD ETVLEAASRE AMEEAGVKGI LREDPLGVWE FRSKSSSVEA DCCLGGGCKG 120
  121 YMFALEVKEE LAIWPEQDDR ERRWLNVKEA LELCRYEWMQ SALEEFLRVM AEEGSTKEDS 180
  181 LAISSISNRG ERQIDPRYCF VV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.221849
Match: 1nfsA
Description: Isopentenyl diphosphate isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.960699420760702 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle