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View Structure Prediction Details

Protein: gi|30687388, gi|...
Organism: Arabidopsis thaliana
Length: 507 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30687388, gi|....

Description E-value Query
Range
Subject
Range
gi|79416711 - gi|79416711|ref|NP_189062.3| FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on ...
353.0 [0..4] [507..2]

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Predicted Domain #1
Region A:
Residues: [1-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDRVLARN LRTSVCGTRI LQRTCSTVVT HDVSTSCSNE SNALNNSTDD GPQHDIAIVG  60
   61 GGMVGIALAA SLASKPLTKH LNVAIIDNNP LLGRRNIIEK GHQPDPRVST VTPATISFLK 120
  121 DIGAWKYIEQ QRHAYFDKMQ VWDYTGLGYT RYNANDVHQD VLGCVVENKV LQSSQLSCVQ 180
  181 ESDLQKTVYP ARLNAMDMLP SSSLTGLGEV PSTTDLFMRG RLAKLELSDG NRVYAKLVVG 240
  241 ADGSKSRVRE LAGIKTTGWN YSQNAIICTV EHTAENYTAW QRFLPNGPIA LLPIGDKFSN 300
  301 IVWTMDPKEA SDRKLMNEDD FIKAVNDALD SGYGPNPETT SSRDSLSWLT GDATISAKER 360
  361 FETPPKVVKL SSERMMFPLS LRHAKDYVSK RVALVGDSAH TVHPLAGQGV NLGFADACAL 420
  421 SKAIAEGIAL GTDIGEANLL KRYEAERKPA NIAMMAVLDG IQKMYSLDFG PLNALRAAAF 480
  481 HGAHYISPLK KRIISYASGE QSLPLFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.0
Match: 2gmhA
Description: No description for 2gmhA was found.

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 1.94752631746117 bayes_pls_golite062009
oxidoreductase activity 1.52511707514198 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.18990628739838 bayes_pls_golite062009
antioxidant activity 1.12347155061135 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 0.876978863121464 bayes_pls_golite062009
binding 0.850689563354756 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors 0.643810447309487 bayes_pls_golite062009
protein binding 0.370064403093958 bayes_pls_golite062009
NADPH-adrenodoxin reductase activity 0.23045510393832 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.130601418359425 bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity 0.0438965603843511 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle