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View Structure Prediction Details

Protein: gi|15231057
Organism: Arabidopsis thaliana
Length: 118 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231057.

Description E-value Query
Range
Subject
Range
gi|50945521, gi|... - gi|50945521|ref|XP_482288.1| putative farnesylated protein [Oryza sativa (japonica cultivar-group)],...
gi|125561479 - gi|125561479|gb|EAZ06927.1| hypothetical protein OsI_29168 [Oryza sativa Indica Group]
107.0 [0..1] [118..31]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIKLSVNSE KCRKKAMQVA VAADGVTSVA MEGEFQDELV VVGDGVDSAS LIMALRKKAC  60
   61 HVTLETLEEV KKPQVEEKSI TPHCCIAQCP VVSNEQPRPE VYRIVHDSYG PTTGCLVM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.221849
Match: 1qupA
Description: Copper chaperone for superoxide dismutase, C-terminal domain; Copper chaperone for superoxide dismutase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle