YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15230893, gi\|...
Organism:	Arabidopsis thaliana
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15230893, gi|....

Description	E-value	Query Range	Subject Range
gi\|186510240, gi... - gi\|9294425\|dbj\|BAB02545.1\| unnamed protein product [Arabidopsis thaliana], pir\|\|T52388 hypothetical ...	258.0	[0..1]	[314..1]
gi\|115396432, gi... - gi\|115396432\|ref\|XP_001213855.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	236.0	[0..2]	[257..51]
gi\|83767703 - gi\|83767703\|dbj\|BAE57842.1\| unnamed protein product [Aspergillus oryzae] gi\|169770749 - gi\|169770749\|ref\|XP_001819844.1\| hypothetical protein [Aspergillus oryzae RIB40]	234.0	[0..10]	[257..68]
gi\|66852115, gi\|... - gi\|70999518\|ref\|XP_754478.1\| RNA Polymerase II CTD phosphatase Fcp1 [Aspergillus fumigatus Af293], g...	233.0	[0..10]	[263..68]
gi\|85090500 - gi\|85090500\|ref\|XP_958446.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28919810, gi\|... - gi\|32423109\|ref\|XP_331992.1\| hypothetical protein [Neurospora crassa], gi\|28919810\|gb\|EAA29210.1\| hy...	232.0	[0..10]	[256..144]
gi\|67524889, gi\|... - gi\|67524889\|ref\|XP_660506.1\| hypothetical protein AN2902.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	232.0	[0..10]	[383..68]
gi\|109041778 - gi\|109041778\|ref\|XP_001086442.1\| PREDICTED: similar to CTD small phosphatase-like protein (CTDSP-lik...	228.0	[0..320]	[567..493]
gi\|114583308 - gi\|114583308\|ref\|XP_516089.2\| PREDICTED: similar to CTD (carboxy-terminal domain, RNA polymerase II,... ENSG00000144579,... - IPI:IPI00927233.1\|ENSEMBL:ENSP00000392248\|VEGA:OTTHUMP00000207171 Tax_Id=9606 Gene_Symbol=CTDSP1 29 ...	225.0	[0..10]	[267..10]
gi\|111058587 - gi\|111058587\|gb\|EAT79707.1\| hypothetical protein SNOG_12907 [Phaeosphaeria nodorum SN15]	222.0	[0..2]	[271..277]
gi\|2289786, gi\|5... - ref\|NP_005799.1\| small CTD phosphatase 3 [Homo sapiens], gi\|2289786\|dbj\|BAA21667.1\| HYA22 [Homo sap...	221.0	[0..297]	[567..81]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVAKNLSPE RESKRQKKEP EIMEPSFPLL SPNNCGHWYI RYGFCIVCKS TVDKTIEGRV  60
   61 FDGLHLSSEA LALTKRLITK FSCLNMKKLH LVLDLDLTLI HSVRVPCLSE AEKYLIEEAG 120
  121 STTREDLWKM KVRGDPISIT IEHLVKLRPF LCEFLKEANE MFTMYVYTKG TRPYAEAILK 180
  181 LIDPKKLYFG HRVITRNESP HTKTLDMVLA DERGVVIVDD TRKAWPNNKS NLVLIGRYNY 240
  241 FRSQSRVLKP HSEEKTDESE NNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.39794
Match:	2hhlA
Description:	No description for 2hhlA was found.

Predicted Domain #2

Region A:
Residues: [264-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLANVLKLLK GIHHKFFKVE EEVESQDVRL TMSVVENFSS EPKAKRRKIE PTINESSSSL  60
   61 SSSSSCGHWY ICHGICIGCK STVKKSQGRA FDYIFDGLQL SHEAVALT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [372-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCFTTKLSCL NEKKLHLVLD LDHTLLHTVM VPSLSQAEKY LIEEAGSATR DDLWKIKAVG  60
   61 DPMEFLTKLR PFLRDFLKEA NEFFTMYVYT KGSRVYAKQV LELIDPKKLY FGDRVITKTE 120
  121 SPHMKTLDFV LAEERGVVIV DDTRNVWPDH KSNLVDISKY SYFRLKGQDS MPYSEEKTDE 180
  181 SESEGGLANV LKLLKEVHQR FFRVEEELES KDVRSLLQEI DFELNVESVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	2q5eA
Description:	No description for 2q5eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits