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View Structure Prediction Details

Protein: gi|42563399
Organism: Arabidopsis thaliana
Length: 1056 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|42563399.

Predicted Domain #1
Region A:
Residues: [1-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMEEGASGV GEKIKIGVCV MEKKVKCGSE VFSAPMGEIL DRLQSFGEFE ILHFGDKVIL  60
   61 EDPIESWPIC DCLIAFHSSG YPLEKAQAYA ALRKPFLVNE LDPQYLLHDR RKVYEHLEMY 120
  121 GIPVPRYACV NRKVPNQDLH YFVEEEDFVE VHGERFWKPF VEKPVNGDDH SIMIYYPSSA 180
  181 GGGMKELFRK IGNRSSEFHP DVRRVRREGS YIYEEFMATG GTDVKVYTVG PEYAHAEARK 240
  241 SPVVDGVVMR NTDGKEVRYP VLLTPAEKQM AREVCIAFRQ AVCGFDLLRS EGCSYVCDVN 300
  301 GWSFVKNSYK YYDDAACVLR KMCLDAKAPH LSST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1uc8A
Description: Crystal structure of a lysine biosynthesis enzyme, Lysx, from thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [335-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPPTLPWKVN EPVQSNEGLT RQGSGIIGTF GQSEELRCVI AVVRHGDRTP KQKVKLKVTE  60
   61 EKLLNLMLKY NGGKPRAETK LKSAVQLQDL LDATRMLVPR TRPGRESD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [443-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDAEDLEHAE KLRQVKAVLE EGGHFSGIYR KVQLKPLKWV KIPKSDGDGE EE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [495-634]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPVEALMVLK YGGVLTHAGR KQAEELGRYF RNNMYPGEGT GLLRLHSTYR HDLKIYSSDE  60
   61 GRVQMSAAAF AKGLLDLEGQ LTPILVSLVS KDSSMLDGLD NASIEMEAAK ARLNEIVTSG 120
  121 TKMIDDDQVS SEDFPWMTDG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [635-817]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGLPPNAHEL LRELVKLTKN VTEQVRLLAM DEDENLTEPY DIIPPYDQAK ALGKTNIDSD  60
   61 RIASGLPCGS EGFLLMFARW IKLARDLYNE RKDRFDITQI PDVYDSCKYD LLHNSHLDLK 120
  121 GLDELFKVAQ LLADGVIPNE YGINPQQKLK IGSKIARRLM GKILIDLRNT REEALSVAEL 180
  181 KES

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [818-971]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEQVLSLSAS QREDRNSQPK LFINSDELRR PGTGDKDEDD DKETKYRLDP KYANVKTPER  60
   61 HVRTRLYFTS ESHIHSLMNV LRYCNLDESL LGEESLICQN ALERLCKTKE LDYMSYIVLR 120
  121 LFENTEVSLE DPKRFRIELT FSRGADLSPL RNND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [972-1056]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEAETLLREH TLPIMGPERL QEVGSCLSLE TMEKMVRPFA MPAEDFPPAS TPVGFSGYFS  60
   61 KSAAVLERLV NLFHNYKNSS SNGRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle