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View Structure Prediction Details

Protein: gi|42572263
Organism: Arabidopsis thaliana
Length: 669 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572263.

Description E-value Query
Range
Subject
Range
ACBP4_ARATH - Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1
398.0 [0..1] [669..1]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMPRATSGP AYPERFYAAA SYVGLDGSDS SAKNVISKFP DDTALLLYAL YQQATVGPCN  60
   61 TPKPSAWRPV EQSKWKSWQG LGTMPSIEAM RLFVKILEED DPGWYSRASN DIPDPVVDVQ 120
  121 INQRAKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 2copA
Description: Solution structure of RSGI RUH-040, an ACBP domain from human cDNA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [128-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPVVENGSTF SETKTISTEN GRLAETQDKD VVSEDSNTVS VYNQWTAPQT SGQRPK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.39794
Match: 1x2jA
Description: Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [184-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARYEHGAAVI QDKMYIYGGN HNGRYLGDLH VLDLKSWTWS RVETKVATES QETSTPTLLA  60
   61 PCAGHSLIAW DNKLLSIGGH TKDPSESMQV KVFDPHTITW SMLKTYGKPP VSRGGQSVTM 120
  121 VGKTLVIFGG QDAKRSLLND LHILDLDTMT WDEIDAVGVS PSPRSDHAAA VHAERFLLIF 180
  181 GGGSHATCFD DLHVLDLQTM EWSRPAQQGD APTPRAGHAG VTIGENWFIV GGGDNKSGAS 240
  241 ESVVLNMSTL AWSVVASVQG RVPLASEGLS LVVSSYNGED VLVAFGGYNG RYNNEINLLK 300
  301 PSHKSTLQTK TLEAPLPGSL SAVNNATTRD IESEVEVSQE GRVREIVMDN VNPGSKVEGN 360
  361 SERIIATIKS EKEELEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 2eidA
Description: No description for 2eidA was found.

Predicted Domain #4
Region A:
Residues: [561-669]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLNKERMQTL QLRQELGEAE LRNTDLYKEL QSVRGQLAAE QSRCFKLEVD VAELRQKLQT  60
   61 LETLQKELEL LQRQKAASEQ AAMNAKRQGS GGVWGWLAGS PQEKDDDSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle