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View Structure Prediction Details

Protein: XPO1B_ARATH
Organism: Arabidopsis thaliana
Length: 1076 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for XPO1B_ARATH.

Predicted Domain #1
Region A:
Residues: [1-934]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN  60
   61 TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV IVQLSRDEAS FRTERLYVNK 120
  121 LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ 180
  181 KIKELKQSLN SEFQLIHELC LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI 240
  241 LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS 300
  301 TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC 360
  361 LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD GVKSEVTERQ KLYSDPMSKL 420
  421 RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM 480
  481 LSKLSKQLSG EEWAWNNLNT LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN 540
  541 KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK 600
  601 RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR 660
  661 LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT RVATSLGTFF LSQISLIFLD 720
  721 MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF 780
  781 VPPMMDQVLG DYARNVPDAR ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK 840
  841 NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL 900
  901 LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.0
Match: 2bkuB
Description: Kap95p:RanGTP complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [935-1076]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTFHKPGFKL HVLVLQHLFS LVESGSLAEP LWDAATVPHP YSNNVAFVLE YTTKLLSSSF  60
   61 PNMTTTEVTQ FVNGLYESRN DVGRFKDNIR DFLIQSKEFS AQDNKDLYAE EAAAQMERER 120
  121 QRMLSIPGLI APSEIQDDMA DS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 1w9cA
Description: Proteolytic fragment of CRM1 spanning six C-terminal HEAT repeats
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle