YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CIPK1_ARATH
Organism: Arabidopsis thaliana
Length: 444 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPK1_ARATH.

Description E-value Query
Range
Subject
Range
gi|20260556 - gi|20260556|gb|AAM13176.1| unknown protein [Arabidopsis thaliana]
408.0 [0..1] [444..1]

Back

Predicted Domain #1
Region A:
Residues: [1-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRQEEEKK AEKGMRLGKY ELGRTLGEGN FGKVKFAKDT VSGHSFAVKI IDKSRIADLN  60
   61 FSLQIKREIR TLKMLKHPHI VRLHEVLASK TKINMVMELV TGGELFDRIV SNGKLTETDG 120
  121 RKMFQQLIDG ISYCHSKGVF HRDLKLENVL LDAKGHIKIT DFGLSALPQH FRDDGLLHTT 180
  181 CGSPNYVAPE VLANRGYDGA ASDIWSCGVI LYVILTGCLP FDDRNLAVLY QKICKGDPPI 240
  241 PRWLSPGART MIKRMLDPNP VTRITVVGIK ASEWFKLEYI PSIPDDDDEE EVDTDDDAFS 300
  301 IQELGSEEGK GSDSPTIINA FQLIGMSSF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.154902
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [330-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDLSGFFEQE NVSERRIRFT SNSSAKDLLE KIETAVTEMG FSVQKKHAKL RVKQEERNQK  60
   61 GQVGLSVTAE VFEIKPSLNV VELRKSYGDS CLYRQLYERL LKDVGTSSPE QEIVT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle