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View Structure Prediction Details

Protein: gi|42564106, gi|...
Organism: Arabidopsis thaliana
Length: 179 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42564106, gi|....

Description E-value Query
Range
Subject
Range
gi|92873213, gi|... - gi|92873213|gb|ABE81710.1| Pectinesterase; Pectinesterase inhibitor [Medicago truncatula], gi|928719...
142.0 [0..3] [178..34]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKMALLAK LLILTTLVTT ISVISRANEE LMMQQCHNSD NPTLCLRCLS SDPGSHEADK  60
   61 VGLARIILKC INSHLLVLTK NASTLGSQHY QNPNTAAALK QCGLGFSTAK HGVGEADTQL 120
  121 ITGDYDKAAY DVSVKVVNPP VSCRNSLEAL NIQVPSSFRY HMDVYLALTQ ALLRIVDRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 1xg2B
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle