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View Structure Prediction Details

Protein: gi|42570801
Organism: Arabidopsis thaliana
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42570801.

Description E-value Query
Range
Subject
Range
gi|74180061 - gi|74180061|dbj|BAE36563.1| unnamed protein product [Mus musculus]
240.0 [0..6] [342..274]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELEIVWLV RGAWITVWIV SILPLVIASI PTSKLNSFRE LVLSFAGRGK ILHPSSQFTI  60
   61 PQKCFAHFYV IGVVWTTLLL AATWMYACKM A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLSSEEFQLS DIASRLAGGS DVFSVHKSNM TPVEHRFKVW RAVFLLLLME IHVLRRLIES  60
   61 FYVFKYSPSA RMHILGYFAG LFFYVTAPLS LCSNIAPEVA GFVGN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [197-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVAEFIANGK SHTSAPEFNL LSSISPLMKL GSLQWIGGAI FLWGWIHQRR CHAILGSLRE  60
   61 NPSQAKEYII PYGDWFGMVS SPHFLAEIVL YAGLLIASGG TDITIWLLFG FVAANLTYAA 120
  121 GETHRWYLRK FENYPANRHA IFPYVY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 9.468521
Match: PF02544.7
Description: No description for PF02544.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle