| Protein: | gi|42568843 |
| Organism: | Arabidopsis thaliana |
| Length: | 496 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568843.
| Description | E-value | Query Range |
Subject Range |
|
|
554.0 | [0..1] | [496..1] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MDLGKLIQLS ALLCPFLLSL HFRIAGASAH IYSSQPFHDV GNSLLLYGGS EGIFASSRSL 60
61 IRFENITLWR TITGKGHRSN GLVQAVIFEA SDRNNIGGSA YGGQRSICCT PDLAKLQGCK 120
121 QGEIIRIPSP HD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [133-496] |
1 11 21 31 41 51
| | | | | |
1 PQWPILLPVR FKGKRSSAKM ADTEILITKT GIYNLLFISC DPQLKGLKMT GKTVWKNPDG 60
61 YLPGRMAPLV NFYVYMSLAY LLLSAVWFFQ YLRFRMDILP LQHCITAVIL LGLLEMLFWY 120
121 LDYANFNHTG MRPLALTTWV VTIGALRKTV SRILILCVSM GFGVVKSTLG GLTSKVLLVG 180
181 VTYFIASEIL DIAEHVGIID DMSGRSKLFL VLPDAFLDAF LILWIFTSLS KTLEQLQMKR 240
241 TSVKLEIYRK FSNALAVMVV ASVAWIVYEV YFKATDPFNE RWQTAWTITA FWDVIAFLLL 300
301 CIICYLWTPS QNSQRYAYSG DVDEENEEAQ SLTGGKQDGD ISLVKQEKNA ESDREEDVEE 360
361 DKRE
|
| Detection Method: | |
| Confidence: | 1.15 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
